detectQualityInFASTQFile: Detect quality protocol from a FASTQ file

Description Usage Arguments Value Author(s)

View source: R/io.R

Description

Detect quality protocol from a FASTQ file

Usage

1
detectQualityInFASTQFile(filename, nreads = 5000)

Arguments

filename

Path to a FASTQ or gzipped-FASTQ file

nreads

Number of reads to test quality on. Default is 5000.

Value

A character vector containing the compatible qualities. NULL if none.

Author(s)

Jens Reeder


HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.