countFeatures: Count RNA-Seq Pipeline Genomic Features
In HTSeqGenie: A NGS analysis pipeline.

Description Usage Arguments Details Value Author(s)

Given GRanges, counts number of hits by gene, exon, intergenic, etc

1	countFeatures(reads, features)

`reads`	GRangesList object of interval, usually where reads aligned
`features`	A list of genome annotations as GRangesList

Given a GRanges object, this function performs an overlap against a previously created set of genomic regions. These genomic regions include genes, coding portions of genes (CDS), exons, intergenic regions, and exon groups (which contain two or more exons)

A list of counts by feature

Cory Barr

HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.