checkPicardJar: checkPicardJar

Description Usage Arguments Details Value Author(s)

View source: R/picard.R

Description

Check for a jar file from picard tools

Usage

1
checkPicardJar(toolname, path = getOption("picard.path"))

Arguments

toolname

Name of the Picard Tool, e.g. MarkDuplicates

path

Path to folder containing picard jars

Details

Call a tool from picard and see if it responds.

Value

TRUE if tool can be called, FALSE otherwise

Author(s)

Jens Reeder


HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.