countGenomicFeaturesChunk: Count reads by genomic Feature
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/countGenomicFeatures.R
Description
Count reads by genomic Feature
Usage
1
countGenomicFeaturesChunk(save_dir, genomic_features)
Arguments
save_dir
PAth to a pipeline run's save dir
genomic_features
A list of genomic features to tally
Details
given a BAM-file output from gsnap (with the MD tag), count
hits to exons, genes, ncRNAs, etc.
and quantify miRNA/ncRNA contaminatino
Value
Nothing
Author(s)
Cory Barr
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value Author(s)
View source: R/countGenomicFeatures.R
Description
Count reads by genomic Feature
Usage
1 | countGenomicFeaturesChunk(save_dir, genomic_features)
|
Arguments
save_dir |
PAth to a pipeline run's save dir |
genomic_features |
A list of genomic features to tally |
Details
given a BAM-file output from gsnap (with the MD tag), count hits to exons, genes, ncRNAs, etc. and quantify miRNA/ncRNA contaminatino
Value
Nothing
Author(s)
Cory Barr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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