countGenomicFeaturesChunk: Count reads by genomic Feature

Description Usage Arguments Details Value Author(s)

View source: R/countGenomicFeatures.R

Description

Count reads by genomic Feature

Usage

1
countGenomicFeaturesChunk(save_dir, genomic_features)

Arguments

save_dir

PAth to a pipeline run's save dir

genomic_features

A list of genomic features to tally

Details

given a BAM-file output from gsnap (with the MD tag), count hits to exons, genes, ncRNAs, etc. and quantify miRNA/ncRNA contaminatino

Value

Nothing

Author(s)

Cory Barr


HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.