excludeVariantsByRegions: Filter variants by regions

Description Usage Arguments Details Value Author(s)

View source: R/gatk.R

Description

Filter variants by regions

Usage

1
excludeVariantsByRegions(variants, mask)

Arguments

variants

Variants as Vranges, GRanges or VCF object

mask

region to mask, given as GRanges

Details

This function can be used to filter variants in a given region, e.g. low complexity and repeat regions

Value

The filtered variants

Author(s)

Jens Reeder


HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.