excludeVariantsByRegions: Filter variants by regions
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Filter variants by regions
Usage
1
excludeVariantsByRegions(variants, mask)
Arguments
variants
Variants as Vranges, GRanges or VCF object
mask
region to mask, given as GRanges
Details
This function can be used to filter variants in a given region,
e.g. low complexity and repeat regions
Value
The filtered variants
Author(s)
Jens Reeder
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Filter variants by regions
Usage
1 | excludeVariantsByRegions(variants, mask)
|
Arguments
variants |
Variants as Vranges, GRanges or VCF object |
mask |
region to mask, given as GRanges |
Details
This function can be used to filter variants in a given region, e.g. low complexity and repeat regions
Value
The filtered variants
Author(s)
Jens Reeder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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