API for IdMappingAnalysis
ID Mapping Analysis

Global functions
.onAttach	Source code
.onLoad	Source code
Bootstrap	Man page
Bootstrap.plot	Man page
Corr	Man page
Corr.getData	Man page
Corr.getUniquePairs	Man page
Corr.plot	Man page
CorrData	Man page
CorrData$pack.experiments	Man page
CorrData.as.MultiSet	Man page
CorrData.getExperimentSet	Man page
CorrData.getSampleNames	Man page
CorrData.getUniquePairs	Man page
CorrData.interactive.plot	Man page
CorrData.pack.experiments	Man page
CorrData.plot	Man page
CorrData.primaryKey	Man page
CorrData.secondaryKey	Man page
CsvList.merge	Man page
CsvList.merge,Misc-method	Man page
CsvList.merge.Misc	Man page
DataFilter	Man page
DataFilter$do.apply	Man page
DataFilter$fisherTransform	Man page
DataFilter$fisherTransformInverse	Man page
DataFilter$fisherTransformJacobean	Man page
DataFilter$logTen	Man page
DataFilter$minAvgCountConstraint	Man page
DataFilter$minCountConstraint	Man page
DataFilter$minCountGroupConstraint	Man page
DataFilter$removeNASeries	Man page
DataFilter.do.apply	Man page
DataFilter.fisherTransform	Man page
DataFilter.fisherTransformInverse	Man page
DataFilter.fisherTransformJacobean	Man page
DataFilter.logTen	Man page
DataFilter.minAvgCountConstraint	Man page
DataFilter.minCountConstraint	Man page
DataFilter.minCountGroupConstraint	Man page
DataFilter.removeNASeries	Man page
Display	Man page
Display$copy	Man page
Display$create	Man page
Display$line.loess	Man page
Display$line.unsorted	Man page
Display$progressMsg	Man page
Display$textBoundingBox	Man page
Display$zoom.pars	Man page
Display.copy	Man page
Display.create	Man page
Display.line.loess	Man page
Display.line.unsorted	Man page
Display.progressMsg	Man page
Display.textBoundingBox	Man page
Display.zoom.pars	Man page
Generic R.00 objects	Man page
IdMap	Man page
IdMap$as.list	Man page
IdMap$swapKeys	Man page
IdMap.as.UniquePairs	Man page
IdMap.as.list	Man page
IdMap.getCounts	Man page
IdMap.merge	Man page
IdMap.swapKeys	Man page
IdMapBase	Man page
IdMapBase.[	Man page
IdMapBase.aligned	Man page
IdMapBase.as.data.frame	Man page
IdMapBase.dim	Man page
IdMapBase.dimnames	Man page
IdMapBase.getName	Man page
IdMapBase.primaryIDs	Man page
IdMapBase.primaryKey	Man page
IdMapBase.secondaryKey	Man page
IdMapCounts	Man page
IdMapCounts.getStats	Man page
IdMapCounts.plot	Man page
IdMapDiff	Man page
IdMapDiffCounts	Man page
IdMapDiffCounts.getCompoundEvents	Man page
IdMapDiffCounts.getCompoundGroups	Man page
IdMapDiffCounts.plot	Man page
IdMapDiffCounts.summary	Man page
JointIdMap	Man page
JointIdMap.as.data.frame	Man page
JointIdMap.diffCounts.plot	Man page
JointIdMap.ecdf.plot	Man page
JointIdMap.getCounts	Man page
JointIdMap.getDiff	Man page
JointIdMap.getIdMapList	Man page
JointIdMap.getMapNames	Man page
JointIdMap.getMatchInfo	Man page
JointIdMap.getUnionIdMap	Man page
JointUniquePairs	Man page
JointUniquePairs$boxplotdataJitter	Man page
JointUniquePairs.boxplot	Man page
JointUniquePairs.boxplotdataJitter	Man page
JointUniquePairs.corr.boxplot	Man page
JointUniquePairs.corr.plot	Man page
JointUniquePairs.do.glm	Man page
JointUniquePairs.getBootstrap	Man page
JointUniquePairs.getCorr	Man page
JointUniquePairs.getCorrData	Man page
JointUniquePairs.getCorrDataFrame	Man page
JointUniquePairs.getMapNames	Man page
JointUniquePairs.getMatchInfo	Man page
JointUniquePairs.getMixture	Man page
JointUniquePairs.getUniquePairs	Man page
JointUniquePairs.interactive.corr.boxplot	Man page
JointUniquePairs.interactive.corr.plot	Man page
JointUniquePairs.interactive.mixture.boxplot	Man page
JointUniquePairs.interactive.mixture.plot	Man page
JointUniquePairs.interactive.plot	Man page
JointUniquePairs.mixture.boxplot	Man page
JointUniquePairs.mixture.plot	Man page
JointUniquePairs.subsetCorr	Man page
JointUniquePairs.subsetData	Man page
JointUniquePairs.subsetGroups	Man page
Misc	Man page
Misc$CsvList.merge	Man page
Misc$interleave	Man page
Misc$to.base	Man page
Misc$to.binary.logical	Man page
Misc$to.index.expr	Man page
Misc$words	Man page
Misc.CsvList.merge	Man page
Misc.interleave	Man page
Misc.to.base	Man page
Misc.to.binary.logical	Man page
Misc.to.index.expr	Man page
Misc.words	Man page
Mixture	Man page
Mixture.clust	Man page
Mixture.getData	Man page
Mixture.getStats	Man page
Mixture.plot	Man page
Mixture.primaryKey	Man page
Mixture.secondaryKey	Man page
Subset	Man page
Subset$byColNames	Man page
Subset$byColumn	Man page
Subset$byRow	Man page
Subset$byRowNames	Man page
Subset.byColNames	Man page
Subset.byColumn	Man page
Subset.byRow	Man page
Subset.byRowNames	Man page
UniquePairs	Man page
UniquePairs$create	Man page
UniquePairs$swapKeys	Man page
UniquePairs.as.IdMap	Man page
UniquePairs.create	Man page
UniquePairs.equals	Man page
UniquePairs.getMatch	Man page
UniquePairs.swapKeys	Man page
UniquePairs.unique	Man page
[,IdMapBase-method	Man page
[.IdMapBase	Man page
aligned	Man page
aligned,IdMapBase-method	Man page
aligned.IdMapBase	Man page
as.IdMap	Man page
as.IdMap,UniquePairs-method	Man page
as.IdMap.UniquePairs	Man page
as.MultiSet	Man page
as.MultiSet,CorrData-method	Man page
as.MultiSet.CorrData	Man page
as.UniquePairs	Man page
as.UniquePairs,IdMap-method	Man page
as.UniquePairs.IdMap	Man page
as.data.frame,IdMapBase-method	Man page
as.data.frame,JointIdMap-method	Man page
as.data.frame.IdMapBase	Man page
as.data.frame.JointIdMap	Man page
as.list,IdMap-method	Man page
as.list.IdMap	Man page
boxplot,JointUniquePairs-method	Man page
boxplot.JointUniquePairs	Man page
boxplotdataJitter	Man page
boxplotdataJitter,JointUniquePairs-method	Man page
boxplotdataJitter.JointUniquePairs	Man page
byColNames	Man page
byColNames,Subset-method	Man page
byColNames.Subset	Man page
byColumn	Man page
byColumn,Subset-method	Man page
byColumn.Subset	Man page
byRow	Man page
byRow,Subset-method	Man page
byRow.Subset	Man page
byRowNames	Man page
byRowNames,Subset-method	Man page
byRowNames.Subset	Man page
clust	Man page
clust,Mixture-method	Man page
clust.Mixture	Man page
copy	Man page
copy,Display-method	Man page
copy.Display	Man page
corr.boxplot	Man page
corr.boxplot,JointUniquePairs-method	Man page
corr.boxplot.JointUniquePairs	Man page
corr.plot	Man page
corr.plot,JointUniquePairs-method	Man page
corr.plot.JointUniquePairs	Man page
create	Man page
create,Display-method	Man page
create,UniquePairs-method	Man page
create.Display	Man page
create.UniquePairs	Man page
diffCounts.plot	Man page
diffCounts.plot,JointIdMap-method	Man page
diffCounts.plot.JointIdMap	Man page
dim,IdMapBase-method	Man page
dim.IdMapBase	Man page
dimnames,IdMapBase-method	Man page
dimnames.IdMapBase	Man page
do.apply	Man page
do.apply,DataFilter-method	Man page
do.apply.DataFilter	Man page
do.glm	Man page
do.glm,JointUniquePairs-method	Man page
do.glm.JointUniquePairs	Man page
ecdf.plot	Man page
ecdf.plot,JointIdMap-method	Man page
ecdf.plot.JointIdMap	Man page
equals,UniquePairs-method	Man page
equals.UniquePairs	Man page
examples	Man page
expectedUtility	Man page Source code
fisherTransform	Man page
fisherTransform,DataFilter-method	Man page
fisherTransform.DataFilter	Man page
fisherTransformInverse	Man page
fisherTransformInverse,DataFilter-method	Man page
fisherTransformInverse.DataFilter	Man page
fisherTransformJacobean	Man page
fisherTransformJacobean,DataFilter-method	Man page
fisherTransformJacobean.DataFilter	Man page
fit2clusters	Man page Source code
getBootstrap	Man page
getBootstrap,JointUniquePairs-method	Man page
getBootstrap.JointUniquePairs	Man page
getCompoundEvents	Man page
getCompoundEvents,IdMapDiffCounts-method	Man page
getCompoundEvents.IdMapDiffCounts	Man page
getCompoundGroups	Man page
getCompoundGroups,IdMapDiffCounts-method	Man page
getCompoundGroups.IdMapDiffCounts	Man page
getCorr	Man page
getCorr,JointUniquePairs-method	Man page
getCorr.JointUniquePairs	Man page
getCorrData	Man page
getCorrData,JointUniquePairs-method	Man page
getCorrData.JointUniquePairs	Man page
getCorrDataFrame	Man page
getCorrDataFrame,JointUniquePairs-method	Man page
getCorrDataFrame.JointUniquePairs	Man page
getCounts	Man page
getCounts,IdMap-method	Man page
getCounts,JointIdMap-method	Man page
getCounts.IdMap	Man page
getCounts.JointIdMap	Man page
getData	Man page
getData,Corr-method	Man page
getData,Mixture-method	Man page
getData.Corr	Man page
getData.Mixture	Man page
getDiff	Man page
getDiff,JointIdMap-method	Man page
getDiff.JointIdMap	Man page
getExperimentSet	Man page
getExperimentSet,CorrData-method	Man page
getExperimentSet.CorrData	Man page
getIdMapList	Man page
getIdMapList,JointIdMap-method	Man page
getIdMapList.JointIdMap	Man page
getMapNames	Man page
getMapNames,JointIdMap-method	Man page
getMapNames,JointUniquePairs-method	Man page
getMapNames.JointIdMap	Man page
getMapNames.JointUniquePairs	Man page
getMatch	Man page
getMatch,UniquePairs-method	Man page
getMatch.UniquePairs	Man page
getMatchInfo	Man page
getMatchInfo,JointIdMap-method	Man page
getMatchInfo,JointUniquePairs-method	Man page
getMatchInfo.JointIdMap	Man page
getMatchInfo.JointUniquePairs	Man page
getMixture	Man page
getMixture,JointUniquePairs-method	Man page
getMixture.JointUniquePairs	Man page
getName,IdMapBase-method	Man page
getName.IdMapBase	Man page
getSampleNames	Man page
getSampleNames,CorrData-method	Man page
getSampleNames.CorrData	Man page
getStats	Man page
getStats,IdMapCounts-method	Man page
getStats,Mixture-method	Man page
getStats.IdMapCounts	Man page
getStats.Mixture	Man page
getUnionIdMap	Man page
getUnionIdMap,JointIdMap-method	Man page
getUnionIdMap.JointIdMap	Man page
getUniquePairs	Man page
getUniquePairs,Corr-method	Man page
getUniquePairs,CorrData-method	Man page
getUniquePairs,JointUniquePairs-method	Man page
getUniquePairs.Corr	Man page
getUniquePairs.CorrData	Man page
getUniquePairs.JointUniquePairs	Man page
interactive.corr.boxplot	Man page
interactive.corr.boxplot,JointUniquePairs-method	Man page
interactive.corr.boxplot.JointUniquePairs	Man page
interactive.corr.plot	Man page
interactive.corr.plot,JointUniquePairs-method	Man page
interactive.corr.plot.JointUniquePairs	Man page
interactive.mixture.boxplot	Man page
interactive.mixture.boxplot,JointUniquePairs-method	Man page
interactive.mixture.boxplot.JointUniquePairs	Man page
interactive.mixture.plot	Man page
interactive.mixture.plot,JointUniquePairs-method	Man page
interactive.mixture.plot.JointUniquePairs	Man page
interactive.plot	Man page
interactive.plot,CorrData-method	Man page
interactive.plot,JointUniquePairs-method	Man page
interactive.plot.CorrData	Man page
interactive.plot.JointUniquePairs	Man page
interleave	Man page
interleave,Misc-method	Man page
interleave.Misc	Man page
line.loess	Man page
line.loess,Display-method	Man page
line.loess.Display	Man page
line.unsorted	Man page
line.unsorted,Display-method	Man page
line.unsorted.Display	Man page
logTen	Man page
logTen,DataFilter-method	Man page
logTen.DataFilter	Man page
merge,IdMap-method	Man page
merge.IdMap	Man page
minAvgCountConstraint	Man page
minAvgCountConstraint,DataFilter-method	Man page
minAvgCountConstraint.DataFilter	Man page
minCountConstraint	Man page
minCountConstraint,DataFilter-method	Man page
minCountConstraint.DataFilter	Man page
minCountGroupConstraint	Man page
minCountGroupConstraint,DataFilter-method	Man page
minCountGroupConstraint.DataFilter	Man page
mixture.boxplot	Man page
mixture.boxplot,JointUniquePairs-method	Man page
mixture.boxplot.JointUniquePairs	Man page
mixture.plot	Man page
mixture.plot,JointUniquePairs-method	Man page
mixture.plot.JointUniquePairs	Man page
pack.experiments	Man page
pack.experiments,CorrData-method	Man page
pack.experiments.CorrData	Man page
plot,Bootstrap-method	Man page
plot,Corr-method	Man page
plot,CorrData-method	Man page
plot,IdMapCounts-method	Man page
plot,IdMapDiffCounts-method	Man page
plot,Mixture-method	Man page
plot.Bootstrap	Man page
plot.Corr	Man page
plot.CorrData	Man page
plot.IdMapCounts	Man page
plot.IdMapDiffCounts	Man page
plot.Mixture	Man page
primaryIDs	Man page
primaryIDs,IdMapBase-method	Man page
primaryIDs.IdMapBase	Man page
primaryKey	Man page
primaryKey,CorrData-method	Man page
primaryKey,IdMapBase-method	Man page
primaryKey,Mixture-method	Man page
primaryKey.CorrData	Man page
primaryKey.IdMapBase	Man page
primaryKey.Mixture	Man page
progressMsg	Man page
progressMsg,Display-method	Man page
progressMsg.Display	Man page
removeNASeries	Man page
removeNASeries,DataFilter-method	Man page
removeNASeries.DataFilter	Man page
secondaryKey	Man page
secondaryKey,CorrData-method	Man page
secondaryKey,IdMapBase-method	Man page
secondaryKey,Mixture-method	Man page
secondaryKey.CorrData	Man page
secondaryKey.IdMapBase	Man page
secondaryKey.Mixture	Man page
subsetCorr	Man page
subsetCorr,JointUniquePairs-method	Man page
subsetCorr.JointUniquePairs	Man page
subsetData	Man page
subsetData,JointUniquePairs-method	Man page
subsetData.JointUniquePairs	Man page
subsetGroups	Man page
subsetGroups,JointUniquePairs-method	Man page
subsetGroups.JointUniquePairs	Man page
summary,IdMapDiffCounts-method	Man page
summary.IdMapDiffCounts	Man page
swapKeys	Man page
swapKeys,IdMap-method	Man page
swapKeys,UniquePairs-method	Man page
swapKeys.IdMap	Man page
swapKeys.UniquePairs	Man page
textBoundingBox	Man page
textBoundingBox,Display-method	Man page
textBoundingBox.Display	Man page
to.base	Man page
to.base,Misc-method	Man page
to.base.Misc	Man page
to.binary.logical	Man page
to.binary.logical,Misc-method	Man page
to.binary.logical.Misc	Man page
to.index.expr	Man page
to.index.expr,Misc-method	Man page
to.index.expr.Misc	Man page
unique,UniquePairs-method	Man page
unique.UniquePairs	Man page
words	Man page
words,Misc-method	Man page
words.Misc	Man page
zoom.pars	Man page
zoom.pars,Display-method	Man page
zoom.pars.Display	Man page