referenceSequences: Access the reference sequences of an AVASet

Description Usage Arguments Value Author(s) See Also Examples

Description

This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the amplicons.

Usage

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Arguments

object

An link{AVASet-class} object.

Value

The data is stored in an object of class AlignedRead and thus gives information about all reference sequences and their position on a chromosome (if alignShortReads has been called before).

Author(s)

Christoph Bartenhagen

See Also

alignShortReads

Examples

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    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)

    referenceSequences(avaSetExample)

R453Plus1Toolbox documentation built on Nov. 1, 2018, 2:27 a.m.