Set up Plot Parameters for caOmicsV bioMatrix Layout

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Description

Put biomatrix plot parameters to CA_OMICS_ENV environment. All arguments should be validated outside in advance. This function is for internal use only.

Usage

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    setBioMatrixPlotParameters(numOfGenes, numOfSamples, numOfPhenotypes, 
            sampleHeight, sampleWidth, columnPadding, rowPadding, 
            geneNameWidth, remarkWidth, summaryWidth, sampleNameHeight, 
            legendHeight)

Arguments

numOfGenes

non-negative integer, total number of genes to be plotted

numOfSamples

non-negative integer, total number of samples to be plotted

numOfPhenotypes

non-negative integer, total number of phenotypes to be plotted

sampleHeight

non-negative numeric, height of polygon (sample) in inch on each row

sampleWidth

non-negative numeric, width of polygon (sample) in inch on each row

columnPadding

non-negative numeric, padding width in inch between two polygons (samples)

rowPadding

non-negative numeric, padding height in inch between two rows

geneNameWidth

non-negative numeric, width of left text plot area in inch for gene names

remarkWidth

non-negative numeric, width of plot area in inch for right side text plot (second set of gene names) and/or summary data plot

summaryWidth

non-negative numeric, width of plot area in inch on right side of data plot area for summary info plot

sampleNameHeight

non-negative numeric, height of plot area in inch for sample names

legendHeight

non-negative numeric, height of legend area

Value

None

Author(s)

Henry Zhang

Examples

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    #  Internal use only

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