SeqObj-class: Class '"SeqObj"'

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

Container for DNA sequence and its meta-data.

Objects from the Class

Objects can be created by calls of the form new("SeqObj", seq, id, species, name, comment, location).

Slots

uid:

Object of class "character" ~~ unique id for internal representation

name:

Object of class "character" ~~ biological reference name, if available

species:

Object of class "character" ~~ reference species

location:

Object of class "character" ~~ location on the reference genome

comment:

Object of class "character" ~~ comments and notes

sequence:

Object of class "DNAString" ~~ the sequence

Methods

initialize

signature(.Object = "SeqObj"): ...

rtfbs.intern

signature(object = "SeqObj"): ...

write.fasta

signature(sequences = "SeqObj"): ...

Author(s)

Manuela Benary <[e-mail]>

See Also

cobindr configuration

Examples

showClass("SeqObj")

cobindR documentation built on April 28, 2020, 6:40 p.m.