find.pairs: function to find pairs of binding sites for every sequence in...
In cobindR: Finding Co-occuring motifs of transcription factor binding sites
Description
Usage
Arguments
Value
Author(s)
See Also
Description
find.pairs creates a data frame with all pairs in all sequences within
the given distance.
Usage
1
find.pairs(x, background_scan = FALSE, n.cpu = NA)
Arguments
x
an object of the class "cobindr", which will hold all necessary
information about the sequences and the hits.
background_scan
logical flag, if background_scan = TRUE the pairs for the background
sequences will be found.
n.cpu
number of CPUs to be used for parallelization. Default value is 'NA'
in which case the number of available CPUs is checked and than used.
Value
runObj
an object of the class "cobindr" including the pairs of
transcription factor binding sites
Author(s)
Yue-Hien Lee <>
See Also
cobindR documentation built on April 28, 2020, 6:40 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
find.pairs creates a data frame with all pairs in all sequences within the given distance.
Usage
1 | find.pairs(x, background_scan = FALSE, n.cpu = NA)
|
Arguments
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
background_scan |
logical flag, if background_scan = TRUE the pairs for the background sequences will be found. |
n.cpu |
number of CPUs to be used for parallelization. Default value is 'NA' in which case the number of available CPUs is checked and than used. |
Value
runObj |
an object of the class "cobindr" including the pairs of transcription factor binding sites |
Author(s)
Yue-Hien Lee <>
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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