plot.positionprofile: function to plot a profile over the total number of predicted...
In cobindR: Finding Co-occuring motifs of transcription factor binding sites
Description
Usage
Arguments
Author(s)
See Also
Description
plot.positionprofile provides position-wise profile plot over total
number of predicted TFBS for each PWM over all input
sequences. Windowing is used to provide a smoother appreance, the window
size can be adjusted with the window parameter.
Usage
1
2
## S4 method for signature 'cobindr'
plot.positionprofile(x, wind.len = 50)
Arguments
x
an object of the class "cobindr", which will hold all necessary
information about the sequences and the hits.
wind.len
integer, defining the length of the window for counting the hits.
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>
See Also
cobindR documentation built on April 28, 2020, 6:40 p.m.
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Description Usage Arguments Author(s) See Also
Description
plot.positionprofile provides position-wise profile plot over total number of predicted TFBS for each PWM over all input sequences. Windowing is used to provide a smoother appreance, the window size can be adjusted with the window parameter.
Usage
1 2 | ## S4 method for signature 'cobindr'
plot.positionprofile(x, wind.len = 50)
|
Arguments
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
wind.len |
integer, defining the length of the window for counting the hits. |
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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