plot.pairdistance: function to plot the distance of the pairs in the sequences

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

For a specified pair of PWMs the function creates histogram plot of distances between pairs of TFs as specified by pwm1 and pwm2

Usage

## S4 method for signature 'cobindr'
plot.pairdistance(x, pwm1, pwm2, breaks=50, main=NA, xlab=NA, ylab=NA, background=FALSE)

Arguments

x	an object of the class "cobindr", which will hold all necessary information about the sequences and the hits.
pwm1	name of the first PWM
pwm2	name of the second PWM
breaks	number of breaks to separate the distance distribution into
main	figure title
xlab	label for the x-axis of the figure
ylab	label for the y-axis of the figure
background	flag allowing to plot foreground or background distance distribution

Author(s)

Manuela Benary <[e-mail]>

See Also

plot.pairdistribution

cobindR documentation built on April 28, 2020, 6:40 p.m.