Description Usage Arguments Author(s) See Also
For a specified pair of PWMs the function creates histogram plot of distances between pairs of TFs as specified by pwm1 and pwm2
1 2 | ## S4 method for signature 'cobindr'
plot.pairdistance(x, pwm1, pwm2, breaks=50, main=NA, xlab=NA, ylab=NA, background=FALSE)
|
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
pwm1 |
name of the first PWM |
pwm2 |
name of the second PWM |
breaks |
number of breaks to separate the distance distribution into |
main |
figure title |
xlab |
label for the x-axis of the figure |
ylab |
label for the y-axis of the figure |
background |
flag allowing to plot foreground or background distance distribution |
Manuela Benary <manuela.benary@cms.hu-berlin.de>
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