bg_sequences: list of background sequence

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

list of background sequence

Usage

## S4 method for signature 'cobindr'
bg_sequences(x)
## S4 replacement method for signature 'cobindr,list'
bg_sequences(x) <- value

Arguments

x	a cobindr object
value	list of background sequence of type SeqObj

Value

list of background sequences (SeqObj)

Author(s)

Rob Lehmann <[e-mail]>

See Also

uid,name,bg_sequences,bg_sequences,desc,configuration,binding_sites,bg_binding_sites,pfm,pairs,bg_pairs,pairs_of_interest

Examples

cfg <- cobindRConfiguration()
sequence_type(cfg) <- 'fasta'
sequence_source(cfg) <- system.file('extdata/sox_oct_example_vignette_seqs.fasta',package='cobindR')
sequence_origin(cfg) <- 'Mouse Embryonic Stem Cell Example ChIP-Seq Oct4 Peak bg_sequences'
cbr <- cobindr(cfg)
length(bg_sequences(cbr))

cobindR documentation built on April 28, 2020, 6:40 p.m.