predicted2pwm: function to convert predicted TFBS hits into a PWM

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

function converts for each input PWM the predicted TFBS hits into a PWM. Function is intended to be used together with the sequence logo creation function 'plot.tfbslogo'.

Usage

## S4 method for signature 'cobindr'
predicted2pwm(x, as.pfm=FALSE)

Arguments

x	object of class "cobindr" describing the sequences and the predicted TFBS.
as.pfm	logical flag, to indicate whether the function should return a PFM (TRUE) or a PWM (FALSE)

Value

predPwm

positional frequency matrix based on consensus matrix

Author(s)

Robert Lehmann <[e-mail]>

See Also

plot.tfbslogo

cobindR documentation built on April 28, 2020, 6:40 p.m.