get.bindingsite.ranges: convenience function to convert predicted binding sites to...
In cobindR: Finding Co-occuring motifs of transcription factor binding sites
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Function converts predicted binding sites into a GRanges object (package: GenomicFeatures). This allows for
easy interaction with other tools as well as output of different formats (bed, gff).
Usage
1
Arguments
x
An object of the class "cobindr", which will hold the predicted binding site locations.
...
optional additional parameters
Value
A GRanges object holding the positions of all predicted transcription factor binding sites relative to
the input sequence.
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>
See Also
get.pairs
write.bindingsites
write.bindingsites.table
Examples
1
# export(get.bindingsite.ranges(runObj), "tfbs_hits.gff3")
cobindR documentation built on April 28, 2020, 6:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Function converts predicted binding sites into a GRanges object (package: GenomicFeatures). This allows for easy interaction with other tools as well as output of different formats (bed, gff).
Usage
1 |
Arguments
x |
An object of the class "cobindr", which will hold the predicted binding site locations. |
... |
optional additional parameters |
Value
A GRanges object holding the positions of all predicted transcription factor binding sites relative to the input sequence.
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>
See Also
get.pairs write.bindingsites write.bindingsites.table
Examples
1 | # export(get.bindingsite.ranges(runObj), "tfbs_hits.gff3")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.