plot.positions.simple: function to plot hits for each PWM on the individual sequence
In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description Usage Arguments Author(s) See Also

plot.positions plots hits for each PWM on the individual sequence. Which sequences to plot can be specified by providing a list of sequence identifiers seq.ids. Which PWMs to plot can be specified as list of PWMs. The total height of the plot can be adjusted via argument height.

1 2	## S4 method for signature 'cobindr' plot.positions.simple(x, seq.ids, pwms, main)

`x`	an object of the class "cobindr", which will hold all necessary information about the sequences and the hits.
`seq.ids`	list of sequence identifiers, for which the positions of TFBS will be plotted.
`pwms`	list of PWMs, for which the positions will be visualized. If no list is given, all PWMs in runObj are used.
`main`	title for the plot, if no title is given than 'predicted TFBS positions per sequence' will be used