plot.tfbslogo: function to plot sequence logos based on hits of tools
In cobindR: Finding Co-occuring motifs of transcription factor binding sites
Description
Usage
Arguments
Author(s)
Description
plot.tfbslogo produces a sequence logo based on all hits per position
weight matrix. If a file path is specified in pdf.name, sequences logos
will be written into the specified file.
Usage
1
2
## S4 method for signature 'cobindr'
plot.tfbslogo(x, pwms)
Arguments
x
Object
pwms
vector of names of position weight matrices used for searching the
sequences. For each pwm a new sequence logo based on the hits is produced.
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de
cobindR documentation built on April 28, 2020, 6:40 p.m.
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Description Usage Arguments Author(s)
Description
plot.tfbslogo produces a sequence logo based on all hits per position weight matrix. If a file path is specified in pdf.name, sequences logos will be written into the specified file.
Usage
1 2 | ## S4 method for signature 'cobindr'
plot.tfbslogo(x, pwms)
|
Arguments
x |
Object |
pwms |
vector of names of position weight matrices used for searching the sequences. For each pwm a new sequence logo based on the hits is produced. |
Author(s)
Robert Lehmann <r.lehmann@biologie.hu-berlin.de
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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