pairs: motif hit pairs in the foreground sequences

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

motif hit pairs in the foreground sequences

Usage

## S4 method for signature 'configuration'
pairs(x)
## S4 replacement method for signature 'configuration,character'
pairs(x) <- value
## S4 method for signature 'cobindr'
pairs(x)
## S4 replacement method for signature 'cobindr,data.frame'
pairs(x) <- value

Arguments

x	a cobindR configuration object
value	for a configuration object, pairs is a character specifying the motif pairs which should be considered. for a cobindR object, pairs is a data.frame holding the detected motif pairs.

Value

pairs (character)

Author(s)

Rob Lehmann <[e-mail]>

See Also

id,experiment_description,sequence_source,sequence_origin,sequence_type,bg_sequence_source,bg_sequence_origin,bg_sequence_type,species,downstream,upstream,max_distance,pairs,pfm_path,threshold,fdrThreshold,path,mart,pValue

Examples

cfg <- cobindRConfiguration()
pairs(cfg)

cobindR documentation built on April 28, 2020, 6:40 p.m.