pValue: pValue threshold used for motif hit finding

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

pValue threshold used for motif hit finding

Usage

## S4 method for signature 'configuration'
pValue(x)
## S4 replacement method for signature 'configuration,numeric'
pValue(x) <- value

Arguments

x	a cobindR configuration object
value	the p-value threshold used for hit searching

Value

pValue threshold (numeric)

Author(s)

Rob Lehmann <[e-mail]>

See Also

id,experiment_description,sequence_source,sequence_origin,sequence_type,bg_sequence_source,bg_sequence_origin,bg_sequence_type,species,downstream,upstream,max_distance,pairs,pfm_path,threshold,fdrThreshold,path,mart,pValue

Examples

cfg <- cobindRConfiguration()
pValue(cfg)

cobindR documentation built on April 28, 2020, 6:40 p.m.