API for fCI
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
| Global functions | |
|---|---|
| NPCI-class | Man page |
| call.npci | Man page |
| call.npci,NPCI-method | Man page |
| call.npci-methods | Man page |
| compute | Man page |
| compute,NPCI-method | Man page |
| compute-methods | Man page |
| deg.pairwise.fold.change | Man page Source code |
| deg.up.down.info | Man page Source code |
| deseq.median.ratio.normalization | Man page Source code |
| divergence.multivariate.distributions | Man page Source code |
| fCI-class | Man page |
| fCI.call.by.index | Man page Source code |
| fci.data | Man page |
| figures | Man page |
| figures,NPCI-method | Man page |
| figures-methods | Man page |
| find.fci.targets | Man page |
| find.fci.targets,NPCI-method | Man page |
| find.fci.targets-methods | Man page |
| find.mid.point | Man page Source code |
| get.fold.large.step | Man page Source code |
| get.npci.data | Man page Source code |
| get.npci.distance.matrix | Man page Source code |
| get.outline.index | Man page Source code |
| get.protein.fold.step | Man page Source code |
| get.rank.combinations | Man page Source code |
| get.rna.fold.step | Man page Source code |
| initialize,NPCI-method | Man page |
| initialize-methods | Man page |
| intersect.of.lists | Man page Source code |
| is.installed | Man page Source code |
| multi.dimensional.fci.data | Man page |
| normalization | Man page |
| normalization,NPCI-method | Man page |
| normalization-methods | Man page |
| npci.gene.by.pvalues | Man page Source code |
| npci.index.reconsidered | Man page Source code |
| npci.index.to.be.removed | Man page Source code |
| npci.venn.diagram | Man page Source code |
| pairwise.change.occupancy | Man page Source code |
| populate | Man page |
| populate,NPCI-method | Man page |
| populate-methods | Man page |
| report.target.summary | Man page Source code |
| setfCI | Man page |
| setfCI,NPCI-method | Man page |
| setfCI-methods | Man page |
| show.targets | Man page |
| show.targets,NPCI-method | Man page |
| show.targets-methods | Man page |
| summarize | Man page |
| summarize,NPCI-method | Man page |
| summarize-methods | Man page |
| total.library.size.normalization | Man page Source code |
| trim.size.normalization | Man page Source code |
| two.sample.log.ratio | Man page Source code |
| two.sample.permutation.test | Man page Source code |
| venndiagram | Man page |
| venndiagram,NPCI-method | Man page |
| venndiagram-methods | Man page |
