npci.index.to.be.removed: gene indexes that will be considered as targets

In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Description

This function will be depreciated.

Usage

npci.index.to.be.removed(expr.by.fold, d, symmetric.fold, max.rank, 
l.max.rank, r.max.rank)

Arguments

expr.by.fold	a 1xN matrix of fold change between case and control for every genes in N genes
d	the dimension of the data, if RNA-Seq or LC-MS/MS data, d=1
symmetric.fold	a booleam valuable indicating whether to use the same fold change cutoff for upregulation and downregulation
max.rank	the maximum fold change, i.e 3 fold
l.max.rank	the maximum fold change for downregulation, i.e 1.5 fold
r.max.rank	the maximum fold change for upregulation, i.e 1.5 fold

Details

TBD

Value

indexes

gene (indexes) considered as differentially expressed

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

 print("Function to be discarded!")

fCI documentation built on Nov. 8, 2020, 6:53 p.m.