get.rank.combinations: fold change values
In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
Description
Usage
Arguments
Details
Value
Note
Author(s)
References
See Also
Examples
View source: R/precomputefCI.R
Description
identify the fold change value indexes beyond the fCI estimation
Usage
1
get.rank.combinations(rank.index.to.be.removed, symmetric.fold)
Arguments
rank.index.to.be.removed
a list of integers representing the genes
to be removed because it exceeds the predefined fold change, i.e
1.2 fold
symmetric.fold
a boolean value indicating the upregulation and
downregulation are treatedly equally
Details
TBD
Value
combinations
a data frame of gene indexes
Note
TBD
Author(s)
Shaojun Tang
References
http://software.steenlab.org/fCI/
See Also
TBD
Examples
1
2
3
rank.index.to.be.removed=list(sample(1:100, 20))
symmetric.fold=TRUE
get.rank.combinations(rank.index.to.be.removed, symmetric.fold)
fCI documentation built on Nov. 8, 2020, 6:53 p.m.
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Description Usage Arguments Details Value Note Author(s) References See Also Examples
View source: R/precomputefCI.R
Description
identify the fold change value indexes beyond the fCI estimation
Usage
1 | get.rank.combinations(rank.index.to.be.removed, symmetric.fold)
|
Arguments
rank.index.to.be.removed |
a list of integers representing the genes to be removed because it exceeds the predefined fold change, i.e 1.2 fold |
symmetric.fold |
a boolean value indicating the upregulation and downregulation are treatedly equally |
Details
TBD
Value
combinations |
a data frame of gene indexes |
Note
TBD
Author(s)
Shaojun Tang
References
http://software.steenlab.org/fCI/
See Also
TBD
Examples
1 2 3 | rank.index.to.be.removed=list(sample(1:100, 20))
symmetric.fold=TRUE
get.rank.combinations(rank.index.to.be.removed, symmetric.fold)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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