NPCI-class: Class '"NPCI"'

In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Description

The main Class that defines the slots values

Objects from the Class

Objects can be created by calls of the form new("NPCI", ...).

Slots

sample.data.file:

Object of class "character" ~~

distance.matrix:

Object of class "matrix" ~~

sample.data.normalized:

Object of class "data.frame" ~~

attr.info:

Object of class "data.frame" ~~

null.data.start:

Object of class "matrix" ~~

diff.data.start:

Object of class "matrix" ~~

expr.by.fold:

Object of class "matrix" ~~

fold.cutoff.list:

Object of class "list" ~~

rank.index.to.be.removed:

Object of class "list" ~~

diff.gene.ids:

Object of class "list" ~~

wt.index:

Object of class "numeric" ~~

df.index:

Object of class "numeric" ~~

ctr.indexes:

Object of class "numeric" ~~

trt.indexes:

Object of class "numeric" ~~

method.option:

Object of class "numeric" ~~

use.ratio:

Object of class "logical" ~~

percent.genes.to.scan:

Object of class "numeric" ~~

num.genes.to.skip.each:

Object of class "numeric" ~~

use.fold.change:

Object of class "logical" ~~

wt.comb:

Object of class "list" ~~

df.comb:

Object of class "list" ~~

diff.ids:

Object of class "list" ~~

result:

Object of class "numeric" ~~

indexes.reconsidered:

Object of class "numeric" ~~

center.by.gaussian.kernel:

Object of class "logical" ~~

symmetric.fold:

Object of class "logical" ~~

pairwise.diff.gene.ids:

Object of class "list" ~~

Methods

No methods defined with class "NPCI" in the signature.

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/NPCI/

See Also

TBD

Examples

showClass("NPCI")

fCI documentation built on Nov. 8, 2020, 6:53 p.m.