Files in fCI
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
NAMESPACE
DESCRIPTION
build/vignette.rds
data/multi.dimensional.fci.RData
data/fci.RData
R/findDivergencefCI.R
R/classfCI.R
R/utils.R
R/postProcessfCI.R
R/buildfCI.R
R/precomputefCI.R
R/plotfCI.R
R/callfCI.R
vignettes/fCI.Rmd
man/summarize.Rd
man/multi.dimensional.fci.data.Rd
man/fCI-class.Rd
man/setfCI-methods.Rd
man/NPCI-class.Rd
man/pairwise.change.occupancy.Rd
man/normalization-methods.Rd
man/npci.index.to.be.removed.Rd
man/get.npci.distance.matrix.Rd
man/compute.Rd
man/intersect.of.lists.Rd
man/get.rna.fold.step.Rd
man/npci.gene.by.pvalues.Rd
man/setfCI.Rd
man/call.npci.Rd
man/get.rank.combinations.Rd
man/find.fci.targets-methods.Rd
man/fCI.call.by.index.Rd
man/two.sample.log.ratio.Rd
man/find.fci.targets.Rd
man/get.npci.data.Rd
man/venndiagram-methods.Rd
man/summarize-methods.Rd
man/two.sample.permutation.test.Rd
man/find.mid.point.Rd
man/get.protein.fold.step.Rd
man/fci.data.Rd
man/divergence.multivariate.distributions.Rd
man/normalization.Rd
man/report.target.summary.Rd
man/show.targets-methods.Rd
man/deseq.median.ratio.normalization.Rd
man/call.npci-methods.Rd
man/get.fold.large.step.Rd
man/total.library.size.normalization.Rd
man/npci.index.reconsidered.Rd
man/npci.venn.diagram.Rd
man/venndiagram.Rd
man/get.outline.index.Rd
man/compute-methods.Rd
man/populate.Rd
man/figures.Rd
man/initialize-methods.Rd
man/populate-methods.Rd
man/figures-methods.Rd
man/is.installed.Rd
man/show.targets.Rd
man/trim.size.normalization.Rd
man/deg.up.down.info.Rd
man/deg.pairwise.fold.change.Rd
inst/doc/fCI.R
inst/doc/fCI.Rmd
inst/doc/fCI.html
inst/extdata/Formula.png
inst/extdata/proteoGenomics.txt
inst/extdata/Fig3.png
inst/extdata/Supp_Dataset_part_2.txt
inst/extdata/Fig2.png
inst/extdata/Fig1.png
