find.fci.targets: identify differentially expressed genes

Description Usage Arguments Details Value Note Author(s) References See Also Examples

Description

identify differentially expressed genes

Usage

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find.fci.targets(.Object, wt.indexes, df.indexes, data.file, use.normalization)

Arguments

.Object

the fCI object

wt.indexes

The wild type sample column indexes in the matrix, i.e. 1,2

df.indexes

The diseases type sample column indexes in the matrix, i.e. 3,4

data.file

The expression matrix

use.normalization

boolean value whether you want the data to be normalized or not

Details

TBD

Value

NA

No values will be returned

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

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 fci=new("NPCI")
 fci.data=data.frame(matrix(sample(3:100, 1043*6, replace=TRUE), 1043,6))
 targets=find.fci.targets(fci, c(1,2,3), c(4,5,6), fci.data)
 head(show.targets(targets))
  

fCI documentation built on Nov. 8, 2020, 6:53 p.m.