get.protein.fold.step: generate fold-change cutoff on proteomics data (with large...

In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Description

generate fold-change cutoff on proteomics data (with large steps of 0.2-0.5 fold)

Usage

get.protein.fold.step()

Details

TBD

Value

folds

returning a vector of recommended fold ratios for proteomic study

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

  get.protein.fold.step()

Example output

Loading required package: FNN
Loading required package: psych
Loading required package: gtools

Attaching package: ‘gtools’

The following object is masked from ‘package:psych’:

    logit

Loading required package: zoo

Attaching package: ‘zoo’

The following objects are masked from ‘package:base’:

    as.Date, as.Date.numeric

Loading required package: rgl
Loading required package: grid
Loading required package: VennDiagram
Loading required package: futile.logger

Attaching package: ‘futile.logger’

The following object is masked from ‘package:gtools’:

    scat

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. 
 [1]  1.1  1.2  1.3  1.4  1.5  1.6  1.7  1.8  1.9  2.0  2.2  2.4  2.6  2.8  3.0
[16]  4.0  5.0  6.0  7.0  8.0  9.0 10.0

fCI documentation built on Nov. 8, 2020, 6:53 p.m.