deg.up.down.info: find targets and their detailed expression changes

In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Description

given expression matrix, find targets and their detailed expression changes

Usage

deg.up.down.info(wt.index.in.list, df.index.in.list, npci, 
use.normalization = FALSE, target.ratio = 0.5)

Arguments

wt.index.in.list	a list of numeric values representing the column indexes for control samples
df.index.in.list	a list of numeric values representing the column indexes for experimental samples
npci	the object npci
use.normalization	a boolean value indicating if the normalization will be applied or not
target.ratio	a numeric value indicating the expected fold changes, i.e, 1.5

Details

TBD

Value

expression ratio

a dataframe of fCI gene expression ratios (folds) defined by control-control index and control-case index

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

  print("TBC")

fCI documentation built on Nov. 8, 2020, 6:53 p.m.