trim.size.normalization: normalize gene expression by exluding genes on the top 5 and...

In fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Description

normalize gene expression by exluding genes on the top 5 and bottom 5 percentage

Usage

trim.size.normalization(sample.data)

Arguments

sample.data

a data frame of gene expression (noen-zero) with columns being the sample and rows being genes

Details

TBD

Value

dataframe

a data frame where column values were normalized by all genes except the top 5 percent and bottom 5 percent genes

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

  sample.data=data.frame(matrix(sample(3:100, 100*4, replace=TRUE), 100,4))
  trim.size.normalization(sample.data)

fCI documentation built on Nov. 8, 2020, 6:53 p.m.