Files in fCI

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

R/findDivergencefCI.R R/classfCI.R R/utils.R R/postProcessfCI.R R/buildfCI.R R/precomputefCI.R R/plotfCI.R R/callfCI.R vignettes/fCI.Rmd man/summarize.Rd man/multi.dimensional.fci.data.Rd man/fCI-class.Rd man/setfCI-methods.Rd man/NPCI-class.Rd man/pairwise.change.occupancy.Rd man/normalization-methods.Rd man/npci.index.to.be.removed.Rd man/get.npci.distance.matrix.Rd man/compute.Rd man/intersect.of.lists.Rd man/get.rna.fold.step.Rd man/npci.gene.by.pvalues.Rd man/setfCI.Rd man/call.npci.Rd man/get.rank.combinations.Rd man/find.fci.targets-methods.Rd man/fCI.call.by.index.Rd man/two.sample.log.ratio.Rd man/find.fci.targets.Rd man/get.npci.data.Rd man/venndiagram-methods.Rd man/summarize-methods.Rd man/two.sample.permutation.test.Rd man/find.mid.point.Rd man/get.protein.fold.step.Rd man/fci.data.Rd man/divergence.multivariate.distributions.Rd man/normalization.Rd man/report.target.summary.Rd man/show.targets-methods.Rd man/deseq.median.ratio.normalization.Rd man/call.npci-methods.Rd man/get.fold.large.step.Rd man/total.library.size.normalization.Rd man/npci.index.reconsidered.Rd man/npci.venn.diagram.Rd man/venndiagram.Rd man/get.outline.index.Rd man/compute-methods.Rd man/populate.Rd man/figures.Rd man/initialize-methods.Rd man/populate-methods.Rd man/figures-methods.Rd man/is.installed.Rd man/show.targets.Rd man/trim.size.normalization.Rd man/deg.up.down.info.Rd man/deg.pairwise.fold.change.Rd inst/doc/fCI.R inst/doc/fCI.Rmd