calcZeroAdjustment: Calculate the zero-inflated component's adjustment factor

In metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Description

Calculate the log ratio of average marginal probabilities for each sample having a positive count. This becomes the adjustment factor for the log fold change.

Usage

calcZeroAdjustment(fitln, fitzero, mod, coef, exclude = NULL)

Arguments

fitln	A matrix with parameters from the log-normal fit
fitzero	A matrix with parameters from the logistic fit
mod	The zero component model matrix
coef	Coefficient of interest
exclude	List of features to exclude

See Also

fitZeroLogNormal fitFeatureModel

metagenomeSeq documentation built on Nov. 8, 2020, 5:34 p.m.