extractMR: Extract the essentials of an MRexperiment.

In metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Description

Extract the essentials of an MRexperiment.

Usage

extractMR(obj)

Arguments

obj	MRexperiment-class object.

Value

A list containing:

• counts : Count data

• librarySize : The column sums / library size / sequencing depth

• normFactors : The normalization scaling factors

• pheno : phenotype table

• feat : feature table

Examples

data(mouseData)
head(metagenomeSeq:::extractMR(mouseData))

metagenomeSeq documentation built on Nov. 8, 2020, 5:34 p.m.