fitZeroLogNormal: Compute the log fold-change estimates for the zero-inflated...

Description Usage Arguments Value See Also

View source: R/fitZeroLogNormal.R

Description

Run the zero-inflated log-normal model given a MRexperiment object and model matrix. Not for the average user, assumes structure of the model matrix.

Usage

1
fitZeroLogNormal(obj, mod, coef = 2, szero = TRUE, spos = TRUE)

Arguments

obj

A MRexperiment object with count data.

mod

The model for the count distribution.

coef

Coefficient of interest to grab log fold-changes.

szero

TRUE/FALSE, shrink zero component parameters.

spos

TRUE/FALSE, shrink positive component parameters.

Value

A list of objects including:

See Also

cumNorm fitFeatureModel


metagenomeSeq documentation built on May 31, 2017, 11:53 a.m.

Search within the metagenomeSeq package
Search all R packages, documentation and source code