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Monocle is an analysis toolkit for single-cell RNA-Seq experiments. To use this package, you will need the R statistical computing environment (version 3.0 or later) and several packages available through Bioconductor and CRAN.

We highly recommend installation of Monocle through the bioconductor project. See here for details:

News and announcements for the Monocle project will appear here:

This release supports Mac OS X and Linux. Windows may support this build, but Monocle has not been tested on Windows yet.

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monocle documentation built on Nov. 8, 2020, 5:06 p.m.