CellType: The CellType class

In monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

Classifies cells using a criterion function.

Details

Classifies cells via a user-defined gating function. The gating function accepts as input the entire matrix of expression data from a CellDataSet, and return TRUE or FALSE for each cell in it, depending on whether each meets the criteria in the gating function

Slots

classify_func:

A function that accepts a matrix of expression values as input, and returns a logical vector (of length equal to the number of columns in the matrix) as output

monocle documentation built on Nov. 8, 2020, 5:06 p.m.