estimateDispersionsForCellDataSet: Helper function to estimate dispersions

In monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

Helper function to estimate dispersions

Usage

estimateDispersionsForCellDataSet(cds, modelFormulaStr, relative_expr,
  min_cells_detected, removeOutliers, verbose = FALSE)

Arguments

cds	a CellDataSet that contains all cells user wants evaluated
modelFormulaStr	a formula string specifying the model to fit for the genes.
relative_expr	Whether to transform expression into relative values
min_cells_detected	Only include genes detected above lowerDetectionLimit in at least this many cells in the dispersion calculation
removeOutliers	a boolean it determines whether or not outliers from the data should be removed
verbose	Whether to show detailed running information.

monocle documentation built on Nov. 8, 2020, 5:06 p.m.