diff_test_helper: Helper function for parallel differential expression testing

In monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

test

Usage

diff_test_helper(x, fullModelFormulaStr, reducedModelFormulaStr,
  expressionFamily, relative_expr, weights, disp_func = NULL,
  verbose = FALSE)

Arguments

x	test
fullModelFormulaStr	a formula string specifying the full model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.
reducedModelFormulaStr	a formula string specifying the reduced model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.
expressionFamily	specifies the VGAM family function used for expression responses
relative_expr	Whether to transform expression into relative values
weights	test
disp_func	test
verbose	Whether to show VGAM errors and warnings. Only valid for cores = 1.

monocle documentation built on Nov. 8, 2020, 5:06 p.m.