extract_good_branched_ordering: Extract a linear ordering of cells from a PQ tree

Description Usage Arguments

Description

Extract a linear ordering of cells from a PQ tree

Usage

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extract_good_branched_ordering(orig_pq_tree, curr_node, dist_matrix,
  num_branches, reverse_main_path = FALSE)

Arguments

orig_pq_tree

The PQ object to use for ordering

curr_node

The node in the PQ tree to use as the start of ordering

dist_matrix

A symmetric matrix containing pairwise distances between cells

num_branches

The number of outcomes allowed in the trajectory.

reverse_main_path

Whether to reverse the direction of the trajectory


monocle documentation built on Nov. 8, 2020, 5:06 p.m.