extract_good_branched_ordering: Extract a linear ordering of cells from a PQ tree

In monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

Extract a linear ordering of cells from a PQ tree

Usage

extract_good_branched_ordering(orig_pq_tree, curr_node, dist_matrix,
  num_branches, reverse_main_path = FALSE)

Arguments

orig_pq_tree	The PQ object to use for ordering
curr_node	The node in the PQ tree to use as the start of ordering
dist_matrix	A symmetric matrix containing pairwise distances between cells
num_branches	The number of outcomes allowed in the trajectory.
reverse_main_path	Whether to reverse the direction of the trajectory

monocle documentation built on Nov. 8, 2020, 5:06 p.m.