cellPairwiseDistances: Get the matrix of pairwise distances between cells

In monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

Retrieves a matrix capturing distances between each cell used during cell ordering.

Usage

cellPairwiseDistances(cds)

Arguments

cds	expression data matrix for an experiment

Value

A square, symmetric matrix containing the distances between each cell in the reduced-dimensionality space.

Examples

## Not run: 
D <- cellPairwiseDistances(HSMM)

## End(Not run)

monocle documentation built on Nov. 8, 2020, 5:06 p.m.