Files in phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
ChangeLog
NAMESPACE
DESCRIPTION
build/vignette.rds
data/epheno.RData
data/eset.genelevel.RData
data/eset.RData
R/epheno.R
R/epheno2html.R
R/epheno_plots.R
R/smoothCoxph.R
R/pca.R
R/gsea2html.R
R/write.html.R
R/eset2genelevel.R
R/findCopyNumber.R
R/getGeneSet.R
R/gsea.R
R/heatmapPhenoTest.R
R/ClassDefinitions.R
vignettes/phenoTest.Rnw
vignettes/references.bib
man/show-methods.Rd
man/gseaSignificance.Rd
man/gseaData-class.Rd
man/heatmapPhenoTest-methods.Rd
man/gsea.Rd
man/getEsPositions.Rd
man/heatmapPhenoTest.Rd
man/gseaSignaturesVar-class.Rd
man/smoothCoxph.Rd
man/export2CSV-methods.Rd
man/write.html.Rd
man/getVars2test.Rd
man/gsea2html.Rd
man/eset2genelevel.Rd
man/plots4epheno.Rd
man/plot.gseaSignatures.Rd
man/ephenoGetters.Rd
man/eset.Rd
man/gseaSignatures-class.Rd
man/pca.Rd
man/gseaSignificanceSign-class.Rd
man/epheno-class.Rd
man/barplotSignatures-methods.Rd
man/eset.genelevel.Rd
man/barplotSignifSignatures-methods.Rd
man/export2CSV.Rd
man/summary.gsea.Rd
man/gseaSignificanceVar-class.Rd
man/epheno2html.Rd
man/genesInArea.Rd
man/pAdjust.Rd
man/gseaSignatures-methods.Rd
man/pAdjust-methods.Rd
man/gseaSignaturesSign-class.Rd
man/plot.gsea.Rd
man/gseaSignatures.Rd
man/gsea.subset.Rd
man/getGseaSignatures.Rd
man/phenoTest-package.Rd
man/findCopyNumber.Rd
man/getVars2test-methods.Rd
man/ExpressionPhenoTest.Rd
man/summary.gseaSignificance.Rd
man/epheno.Rd
man/ClusterPhenoTest.Rd
inst/doc/phenoTest.Rnw
inst/doc/phenoTest.R
inst/doc/phenoTest.pdf
inst/javascript/sorttable.js
inst/javascript/dragtable.js
