dot-ExtractMultiDrugPlotData: Extract Data Table and Annotation Information for Multi-drug...
In synergyfinder: Calculate and Visualize Synergy Scores for Drug Combinations

Description Usage Arguments Value Author(s)

This function extracts the information for Multi-drug plotting from input list data. It is an auxiliary function for PlotMultiDrugSurface and PlotMultiDrugBar.

.ExtractMultiDrugPlotData(
  data,
  plot_block = 1,
  plot_value = "response",
  summary_statistic = NULL,
  statistic = NULL,
  titles = TRUE
)

`data`	A list object generated by function `ReshapeData`.
`plot_block`	A character/integer. It indicates the block ID for the block to visualize.
`plot_value`	A vector of characters. It contains the name of one or more metrics to be visualized. If the `data` is the direct output from ReshapeData, the values for this parameter are: response_origin The original response value in input data. It might be % inhibition or % viability. response The % inhibition after preprocess by function ReshapeData If the `data` is the output from CalculateSynergy, following values are also available: ZIP_ref, Bliss_ref, HSA_ref, Loewe_ref The reference additive effects predicted by ZIP, Bliss, HSA or Loewe model, respectively. ZIP_synergy, Bliss_synergy, HSA_synergy, Loewe_synergy The synergy score calculated by ZIP, Bliss, HSA or Loewe model, respectively. ZIP_fit The response fitted by ZIP model.
`summary_statistic`	A vector of characters or NULL. It indicates the summary statistics for all the `plot_value` in whole combination matrix. Available values are: mean Median value for all the responses or synergy scores in the matrix; median Median value for all the responses or synergy scores in the matrix; quantile_90 90% quantile. User could change the number to print different sample quantile. For example quantile_50 equal to median. If it is `NULL`, no statistics will be printed.
`statistic`	A character or NULL. It indicates the statistics printed in the plot while there are replicates in input data. Available values are: sem Standard error of mean; ci 95 If it is `NULL`, no statistics will be printed.
`titles`	A logical value. If it is `TRUE`, the plot tile, subtilte, and title for z axis will be extracted and output.

A list. It contains the elements:

plot_table A data frame contains concentrations for all drugs, the values for plot_value.
drug_pair A data frame contains the drug names and concentration unites, whither the block is replicate or not.
plot_subtitle A string for plot subtitle.
plot_title A string for plot title.
z_axis_subtitle A string for plot z-axis title.