GetConsensusVAF: Analogous to 'GetMutectVAF', calculating VAF and read depth...
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
View source: R/VCF_to_catalog_functions.R
Description
Analogous to GetMutectVAF, calculating VAF and read depth
from PCAWG7 consensus vcfs
Usage
1
GetConsensusVAF(vcf, mc.cores = 1)
Arguments
vcf
An in-memory VCF data frame.
mc.cores
The number of cores to use. Not available on Windows
unless mc.cores = 1.
ICAMS documentation built on April 3, 2021, 5:07 p.m.
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View source: R/VCF_to_catalog_functions.R
Description
Analogous to GetMutectVAF, calculating VAF and read depth
from PCAWG7 consensus vcfs
Usage
1 | GetConsensusVAF(vcf, mc.cores = 1)
|
Arguments
vcf |
An in-memory VCF data frame. |
mc.cores |
The number of cores to use. Not available on Windows
unless |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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