GetMutationLoadsFromStrelkaSBSVCFs: Get mutation loads information from Strelka SBS VCF files.

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Description

Get mutation loads information from Strelka SBS VCF files.

Usage

GetMutationLoadsFromStrelkaSBSVCFs(catalogs)

Arguments

split.vcfs

A list generated by calling function StrelkaSBSVCFFilesToCatalog to Strelka SBS VCF files.

Value

A list containing mutation loads information from Strelka SBS VCF files:

1. total.variants Total number of mutations.

2. SBS Number of single base substitutions.

3. DBS Number of double base substitutions.

4. ID Number of small insertions and deletions.

5. discarded.variants Number of other types of mutations which are excluded in the analysis in ICAMS.

ICAMS documentation built on April 3, 2021, 5:07 p.m.