VCFsToZipFileXtra: Analogous to 'VCFsToZipFile', also generates density CSV and...

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Analogous to VCFsToZipFile, also generates density CSV and PDF files in the zip archive.

Description

Analogous to VCFsToZipFile, also generates density CSV and PDF files in the zip archive.

Usage

VCFsToZipFileXtra(
  dir,
  zipfile,
  ref.genome,
  variant.caller = "unknown",
  num.of.cores = 1,
  trans.ranges = NULL,
  region = "unknown",
  names.of.VCFs = NULL,
  tumor.col.names = NA,
  filter.status = NULL,
  get.vaf.function = NULL,
  ...,
  max.vaf.diff = 0.02,
  base.filename = "",
  return.annotated.vcfs = FALSE,
  suppress.discarded.variants.warnings = TRUE
)

ICAMS documentation built on June 22, 2024, 6:47 p.m.