MAP.genes: Function to do assign probesets IDs to patterns

In MAMA: Meta-Analysis of MicroArray

Description

Function makes a list of vectors of probeset IDs. One vector contains probesets with one observed pattern.

Usage

MAP.genes(resx, value.dis, files = TRUE)

Arguments

resx	data.frame, rows refer to patterns, columns to pattern description - see in examples
value.dis	Matrix of observed patterns: binary matrix, columns refer to studies, rows to genes,
files	logical, when TRUE, files with probeset IDs are written too

Value

list, each slot is vector of gene names

Author(s)

Ivana Ihnatova

Examples

#> t(resx)
#                        111 101    110    011
#n.sig[which(n.sig > 1)]   3   2  2.000  2.000
#n.strong                 32 127 20.000  6.000
#n.soft                   32 159 52.000 38.000
#p.soft                    0   0  0.000  0.000
#p.strong                  0   0  0.000  0.002
#permu.soft                0   0  0.000  0.000
#permu.strong              0   0  0.001  0.008

MAMA documentation built on Jan. 15, 2017, 3:05 p.m.