conting.tab: Contingency table from gene lists
In MAMA: Meta-Analysis of MicroArray

Description Usage Arguments Details Value Author(s) References See Also Examples

Function to make a contingency table from gene lists as in VennMapper program.

1	conting.tab(lists)

lists

list of vectors. Each vector refers to a method and contains names of significant genes

Simmilar to gene.list and Z, but provides different output

Matrix with counts of matches in pairs of gene lists

Ivana Ihnatova

Smid, M., Dorssers, L. C. J. and Jenster, G. 2003, Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes, Bioinformatics, vol. 19 no. 16 2003

Z,gene.list

lists<-list(Method1=c("Gene_A", "Gene_V","Gene_S","Gene_C","Gene_U","Gene_D","Gene_E","Gene_G","Gene_W"), 
  Method2=c("Gene_D","Gene_W","Gene_G","Gene_E","Gene_H","Gene_X"),
  Method3=c("Gene_L","Gene_K","Gene_J","Gene_M","Gene_V","Gene_T","Gene_R","Gene_U"))
conting.tab(lists)