commonGenes: Function to compute number of common genes in ordered gene...

In MAMA: Meta-Analysis of MicroArray

Description

Function computes number of common genes up to each position (from 1 to n)

Usage

commonGenes(ord, n)

Arguments

ord	Data frame, where columns refer to ordered gene list from one study
n	The last position to be concered

Value

Numeric vector, number of common genes up to each position

Note

Created as part of implementation of the Similarity of Ordered Gene Lists method

Author(s)

Ivana Ihnatova

References

Yang, X., Bentink, S., Scheid, S. Spang, R., Similarities of ordered gene lists, 2005

Examples

genes<-paste("Gene", 1:100)
O<-cbind(sample(genes), sample(genes), sample(genes))
commonGenes(O,100)

MAMA documentation built on Jan. 15, 2017, 3:05 p.m.