gene.list: Intersect of gene lists
In MAMA: Meta-Analysis of MicroArray

Description Usage Arguments Details Value Author(s) See Also Examples

This function takes list of gene list as input and returns a matrix of gene names common in pairs of lists

1	gene.list(lists)

lists

list of vectors. Each vector refers to a method and contains names of significant genes

Simmilar to conting.tab and Z, but provides different output

A matrix of gene names common in two gene lists

Ivana Ihnatova

conting.tab, Z

lists<-list(Method1=c("Gene_A", "Gene_V","Gene_S","Gene_C","Gene_U","Gene_D","Gene_E","Gene_G","Gene_W"), 
  Method2=c("Gene_D","Gene_W","Gene_G","Gene_E","Gene_H","Gene_X"),
  Method3=c("Gene_L","Gene_K","Gene_J","Gene_M","Gene_V","Gene_T","Gene_R","Gene_U"))
gene.list(lists)

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        Method1                       Method2                      
Method1 NA                            "Gene_D;Gene_E;Gene_G;Gene_W"
Method2 "Gene_D;Gene_W;Gene_G;Gene_E" NA                           
Method3 "Gene_V;Gene_U"               ""                           
        Method3        
Method1 "Gene_V;Gene_U"
Method2 ""             
Method3 NA