plotES: Function to do plots in combination of effect size method

In MAMA: Meta-Analysis of MicroArray

Description

Function plots several characteristics examined in meta-analysis with combination effect size method.

Usage

plotES(theScores,ScoresFDR,num.studies, legend.names, colors, which)

Arguments

theScores	Output from function zScores
ScoresFDR	Output from function zScoreFDR
num.studies	number of studies involved in meta-analysis
legend.names	vector of names of studies, the first one should be "Combined Set"
colors	vector of colors used in plots, its length must be 1 + number of studies
which	subset from 1,2,3: 1 for plot of the fraction of the genes that have a higher effect size than the threshold for the combined Z-score, but not for any of the data set specific Z-scores, 2 for plot of the number of genes and the corresponding FDR for the two sided situation and 3 for plot of the number of genes that are below a given threshold for the FDR

Author(s)

Ivana Ihnatova

See Also

zScores, zScoreFDR

MAMA documentation built on Jan. 15, 2017, 3:05 p.m.