Description Usage Arguments Author(s) See Also

Function plots several characteristics examined in meta-analysis with combination effect size method.

1 |

`theScores` |
Output from function |

`ScoresFDR` |
Output from function |

`num.studies` |
number of studies involved in meta-analysis |

`legend.names` |
vector of names of studies, the first one should be "Combined Set" |

`colors` |
vector of colors used in plots, its length must be 1 + number of studies |

`which` |
subset from 1,2,3: 1 for plot of the fraction of the genes that have a higher effect size than the threshold for the combined Z-score, but not for any of the data set specific Z-scores, 2 for plot of the number of genes and the corresponding FDR for the two sided situation and 3 for plot of the number of genes that are below a given threshold for the FDR |

Ivana Ihnatova

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