plot.SOGLresult: Function to plot an object of class SOGLresult

In MAMA: Meta-Analysis of MicroArray

Description

Function draws three plots presented for results of meta-analysis by Similarity of Ordered Gene List method

Usage

## S3 method for class 'SOGLresult'
plot(x, which, ...)

Arguments

x	SOGLresult object, provided by function performSOGL
which	Character indicator which plot has to be drawn, see Details
...	arguments to plot function

Details

If which="alpha selection" Considered alphas and corresponding pAUC are plotted. Red vertical line signs selected alpha. If which="density"Estimated density of random (in black) and subsampled score (in red) If which="empirical CI"Empirical confidence intervals and observed number of overlapping genes

Author(s)

Ivana Ihnatova

References

Yang, X., Bentink, S., Scheid, S. Spang, R., Similarities of ordered gene lists, 2005

MAMA documentation built on Jan. 15, 2017, 3:05 p.m.