metalist.to.matrix: Function to do convert list to matrix

In MAMA: Meta-Analysis of MicroArray

Description

Function converts list (output from pvalcombination, EScombination, metaMA) to matrix. )

Usage

metalist.to.matrix(list, genenames = NULL)

Arguments

list	output from pvalcombination, EScombination
genenames	vector of gene names in same order like in expression set for pvalcombination, can be NULL if the wrapper function metaMA was used.

Value

Matrix. Last columns contains test statistics (last slot from metalist). Other columns are binary vector indicating that the index of the gene was present in other slots of metalist.

Author(s)

Ivana Ihnatova

Examples

data(Singhdata)
pvalt<-pvalcombination(
  esets=Singhdata$esets, 
  classes=Singhdata$classes, 
  moderated = "t", BHth = 0.01)
xx<-metalist.to.matrix(pvalt,Singhdata$geneNames)

MAMA documentation built on Jan. 15, 2017, 3:05 p.m.